Sunday 7 February 2010

Bioinformatics Tools

AmiGo
Gene Ontology
Biok - Biology Interactive Object Kit (Alternative Scripting to BioPerl)
Little b (Language for building mathematical models of complex systems)
BioRuby
TFBS - Perl modules for Transcription Factor Binding Sites
KEGG-SOAP (API for accessing KEGG)
R'MES - word finder
J.Craig Venter Institute Software
AceDB - Classic Bioinformatics Database System
Taverna Bioinformatics Workbench
NPZVisualizer (dynamics of coastal marine ecosystems)
TreeView
LAGAN (alignment toolkit)
Praline (sequence alignment server)
Biorecipes (Bioinformatics code in Darwin)
Gromacs (Molecular Dynamics)
GOR V (Secondary Structure Prediction)
Desmond Google User Group
EMBOSS
BioJava
CryptoDB (Cryptosporidium Genome Resource)
Correspondence Analysis of Codon Usage
CaBIO (Cancer Ontology)
BioMart
MDTools (NIH Resource)
Biobar (Firefox plugin for biological database browsing)
SCWRL (Protein Side-chain Conformations)
PlasmoDB
Sanger Institute Software
Kinemage
Networks at the Gerstein Lab
BioDAS
UCSF Dock
Autodock
Basis Software (University of Newcastle Systems Biology)
Affymetrix Support Software

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